Basic Information
VIS ID
TVIS30001707
Fusion event
HIV-PROX1-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
213996454/213823111 (Hg38)
End
213996454/213823111 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
PROX1-AS1
Nearest miRNA
hsa-mir-101-1/Upstream/1745426; hsa-mir-1182/Downstream/6294742;
Nearest TSS
ENST00000473358/Upstream/91695; ENST00000607726/Downstream/103543;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/433496, chr1-CpG: 42/Downstream/156760
Upstream sequence
aaactccttaccctgcctatttcccaggccctgcCCGTGTCTCTAATATTCATCTCCTTTGCCTGCTTCACTCAGCTATAAATCAAAGCCTtgctacttc
Downstream sequence
ctacttcctctgcctctggcactctcactccactcattcaaggatgttcggtatcacctcccctggaaaagctttcatagaccatcccattatcagtaat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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