Basic Information
VIS ID
TVIS30001713
Fusion event
HIV-H3F3AP4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.12
Reference genome
GRCh37/hg19
Start
226255227/226067526 (Hg38)
End
226255227/226067526 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA1H
Target gene
H3F3AP4
Nearest miRNA
hsa-mir-101-1/Upstream/145384; hsa-mir-1182/Downstream/1874064;
Nearest TSS
ENST00000473358/Upstream/3549; ENST00000602806/Downstream/16113;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3770, chr1-CpG: 101/Downstream/15496
Upstream sequence
ATTTTAGTTATCTTAAAAATACAGAGAGTGggccgggcgccgtgactcacatctgtaatcccaacactttgggaggctgaggtgggtagatcacctgagg
Downstream sequence
tcaggagttccagaccagcgtggccaacatggtgtgaaaccccttctctactaaaaatacaaaaaattagcttggcgtggtggcaggcgcctataatccc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate