Basic Information
VIS ID
TVIS30001714
Fusion event
HIV-ACBD3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q42.12
Reference genome
GRCh37/hg19
Start
226360608/226172907 (Hg38)
End
226360608/226172907 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1H
Target gene
ACBD3
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-877-5p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-203b-3p ; hsa-mir-3606-5p ; hsa-mir-142-3p ; hsa-mir-6073 ; hsa-mir-7852-3p ; hsa-mir-6807-3p ; hsa-mir-3668 ; hsa-mir-217 ; hsa-mir-1273d
Nearest miRNA
hsa-mir-101-1/Upstream/250765; hsa-mir-1182/Downstream/1768683;
Nearest TSS
ENST00000473358/Upstream/11275; ENST00000542034/Downstream/13823;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/50132, chr1-CpG: 66/Downstream/13427
Upstream sequence
gtggcatacagctgggtgcggcggcatgcgcctgaagtccaggcttctctggaggctcaggattgcttgagcctgaaggtcgaggctccaatagactgtg
Downstream sequence
aaagcaccaccgaactccagcctgggtgacagatgaagaccctgtctAAACaacaaacaaacaaacaaacaaacCCAgctgggcctggtggctcatgcct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate