Basic Information
VIS ID
TVIS30001722
Fusion event
HIV-chr1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
GRCh37/hg19
Start
242238972/242075670 (Hg38)
End
242238972/242075670 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/943324; hsa-mir-3124/Downstream/1270506;
Nearest TSS
ENST00000473358/Upstream/76597; ENST00000608241/Downstream/71844;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/17972, chr1-CpG: 177/Downstream/447944
Nearby gene
PLD5(No orient, 12717)
Upstream sequence
tggagggcagtgtcatcacaggcatattcatagtgcactacaaccttcaactcctgtgctcaagtgaccctccagcctcagcgtcctgagtagctgggac
Downstream sequence
gacaggtgcatgccaccgcATTTGCCTACGTCCTTCTTAATTTAGCGGTTACAAAGGGGGGATGGAGGAGGAGGATTCTCTCTACACACCTTGATTTGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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