VISDB Viral Integration Site DataBase

VIS ID

TVIS30001725

Fusion event

HIV-HNRNPU integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q44

Reference genome

Start

End

245015779/244852477 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-7-5p ; hsa-mir-615-3p ; hsa-mir-186-5p ; hsa-mir-149-5p ; hsa-mir-27b-3p ; hsa-mir-30c-5p ; hsa-mir-26a-5p ; hsa-mir-17-5p ; hsa-mir-493-3p ; hsa-mir-3611 ; hsa-mir-548g-3p ; hsa-mir-548av-3p ; hsa-let-7c-3p ; hsa-mir-3668 ; hsa-mir-3163 ; hsa-mir-577 ; hsa-mir-5683 ; hsa-mir-6732-3p ; hsa-mir-3662 ; hsa-mir-7850-5p ; hsa-mir-578 ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-4531 ; hsa-mir-3924 ; hsa-mir-539-5p ; hsa-mir-6505-3p ; hsa-mir-4277 ; hsa-mir-5094 ; hsa-mir-584-3p ; hsa-mir-329-5p ; hsa-mir-7159-3p ; hsa-mir-3678-3p ; hsa-mir-198 ; hsa-mir-2467-3p ; hsa-mir-320e ; hsa-mir-3133 ; hsa-mir-6835-3p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-34a-3p ; hsa-mir-5692a ; hsa-mir-410-3p ; hsa-mir-4516 ; hsa-mir-5703 ; hsa-mir-4434 ; hsa-mir-548x-3p ; hsa-mir-548aq-3p ; hsa-mir-548aj-3p ; hsa-mir-548ae-3p ; hsa-mir-3613-3p ; hsa-mir-551b-5p ; hsa-mir-548c-3p ; hsa-mir-6809-3p ; hsa-mir-4753-3p ; hsa-mir-517c-3p ; hsa-mir-517b-3p ; hsa-mir-517a-3p ; hsa-mir-2117 ; hsa-mir-597-3p ; hsa-mir-8077 ; hsa-mir-7160-5p ; hsa-mir-4663 ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-655-5p ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-7162-3p ; hsa-mir-6730-3p ; hsa-mir-4536-3p ; hsa-mir-4728-3p ; hsa-mir-888-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-3942-3p ; hsa-mir-5100 ; hsa-mir-1245b-3p ; hsa-mir-501-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-let-7a-3p ; hsa-let-7b-3p ; hsa-let-7f-1-3p ; hsa-let-7f-2-3p ; hsa-mir-101-3p ; hsa-mir-1185-1-3p ; hsa-mir-1185-2-3p ; hsa-mir-1233-5p ; hsa-mir-144-3p ; hsa-mir-16-1-3p ; hsa-mir-2113 ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3154 ; hsa-mir-3945 ; hsa-mir-4265 ; hsa-mir-4296 ; hsa-mir-4322 ; hsa-mir-4648 ; hsa-mir-4654 ; hsa-mir-4761-3p ; hsa-mir-4769-5p ; hsa-mir-4789-5p ; hsa-mir-5007-3p ; hsa-mir-5010-3p ; hsa-mir-5689 ; hsa-mir-6731-5p ; hsa-mir-6759-5p ; hsa-mir-6770-5p ; hsa-mir-6778-5p ; hsa-mir-6788-5p ; hsa-mir-6796-5p ; hsa-mir-6878-5p ; hsa-mir-8085 ; hsa-mir-942-3p ; hsa-mir-98-3p

Nearest miRNA

hsa-mir-101-1/Upstream/1506222; hsa-mir-3124/Downstream/2349490;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/16637, chr1-CpG: 200/Downstream/10405

Upstream sequence

CACTGCAATTATAAAATGAATTCCTTAATAAGCAATTTTAAACTAGAAGATATATCCAAAACTTTTTAAAGGCACAAAGGACAACTTTAGGACACAACAC

Downstream sequence

TGATTAGCATCAAAACCTGAAACTGTTCCTCTAGTAAGTCTATGCAATCCTAATAATGTATACTGAAGAGTAGTAGCTCAGGCCAGTGGTTCTTAGCATT