Basic Information
VIS ID
TVIS30001729
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
4007556/3965364 (Hg38)
End
4007556/3965364 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-5699/Upstream/1889275; hsa-mir-107/Downstream/25796;
Nearest TSS
ENST00000439456/Upstream/30845; ENST00000455525/Downstream/59576;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/179430, chr10-CpG: 60/Downstream/860569
Nearby gene
MIR6078(No orient, 25796)
Upstream sequence
ctagtctgtaggaaagtatcccccaagctatgcagatcatgtgaatgaaatgtggccttttccaaatttgatcaccatcctaataatttacatggcatcc
Downstream sequence
ccaacagcaagttatgaaaaaaaggaattttccaactatcaataataataaacaacttttgatcaactgtgctagaggtaagactaaattatctatgttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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