Basic Information
VIS ID
TVIS30001730
Fusion event
HIV-LOC107984195 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
4092641/4050449 (Hg38)
End
4092641/4050449 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984195
Nearest miRNA
hsa-mir-5699/Upstream/59190; hsa-mir-107/Downstream/2101747;
Nearest TSS
ENST00000439456/Upstream/25509; ENST00000455199/Downstream/1277;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/264515, chr10-CpG: 60/Downstream/775484
Nearby gene
LOC101927964(No orient, 1277)
Upstream sequence
TTGGCCGGTCTTAATCACACTCCAAGTCTTTgcactttctcatgttctcacagaagcatcatagtcatcactggagcaggcagggattgctatccccatt
Downstream sequence
ttacagatgatgagactgagATGTGAAGCTCTTTATGAGCATCataacaactaacacttactgagtgcttataacatgggaggcattattcagaatgctt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate