Basic Information
VIS ID
TVIS30001732
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
4224170/4181978 (Hg38)
End
4224170/4181978 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-5699/Upstream/190719; hsa-mir-107/Downstream/1970218;
Nearest TSS
ENST00000439456/Upstream/130252; ENST00000434902/Downstream/61665;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/396044, chr10-CpG: 60/Downstream/643955
Nearby gene
LINC00702(No orient, 24898)
Upstream sequence
ATAATACCGTGCAACAAAGTTACTAGGATATAATTTTTCTGGTTAAGTAACTCAGAGTTACTTTTGTTTTAAGTAATGCTACCTTGAAGAAGTAGTTTTC
Downstream sequence
TTTCACTTTTTCTTTCAATTCTTGTTTTGAATTTGCCAGGCTTTTAAAAAACTACAATGTAATCTTCTGACATGTGAATATATCATTTACTAAGTTAGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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