Basic Information
VIS ID
TVIS30001735
Fusion event
HIV-ITIH5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
7657683/7615720 (Hg38)
End
7657683/7615720 (Hg38)
Orient
-
Location type
Intronic
Target gene
ITIH5
miRNAs that regulate target gene
hsa-mir-29a-3p ; hsa-mir-6809-3p ; hsa-mir-491-3p ; hsa-mir-4753-3p ; hsa-mir-340-5p ; hsa-mir-2117 ; hsa-mir-586 ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-640 ; hsa-mir-433-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-5088-3p
Nearest miRNA
hsa-mir-3155a/Upstream/1463443; hsa-mir-107/Downstream/4515040;
Nearest TSS
ENST00000439456/Upstream/37016; ENST00000473227/Downstream/1546;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/35733, chr10-CpG: 49/Downstream/50986
Upstream sequence
CAATGATTCTATTCCACTGTTCTCAAAGGAATCATCGCTGAACAGAATTACTCCATCAATGATAGTGCTGAGGACTGGCCCTGTCGATGGATTCCTGTCT
Downstream sequence
CACTTACATTATCCACTCTGCCAGTGCTGTTTATTTCAAGGGGTTTCTACAGCACGTCCCTCTGCTCTCTTAAAACCACCACGCTGAAATACAGTTTATG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate