Basic Information
VIS ID
TVIS30001743
Fusion event
HIV-HSPA14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
14898286/14856287 (Hg38)
End
14898286/14856287 (Hg38)
Orient
+
Location type
Intronic
Target gene
HSPA14
miRNAs that regulate target gene
hsa-mir-373-3p ; hsa-mir-222-3p ; hsa-mir-100-5p ; hsa-mir-6083 ; hsa-mir-190a-3p ; hsa-mir-410-3p ; hsa-mir-3163 ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-6514-3p ; hsa-mir-4633-5p ; hsa-mir-6742-5p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-3151-5p ; hsa-mir-491-5p ; hsa-mir-185-3p ; hsa-mir-4283 ; hsa-mir-4489 ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-383-3p ; hsa-mir-532-5p ; hsa-mir-7977
Nearest miRNA
hsa-mir-1265/Upstream/419626; hsa-mir-107/Downstream/2988820;
Nearest TSS
ENST00000439456/Upstream/5572; ENST00000412254/Downstream/22399;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/17245, chr10-CpG: 155/Downstream/22034
Upstream sequence
CAGAAAGATATttgaatacttgctatgtgccaggcactttttccaagagttttacacatattaacttgttgaatactcacaataactctgaggtaggcac
Downstream sequence
tactatttatccccaaggtaagcactattatttatcctagttttgtacgtgaaggcaccaaggtacagagattaagtagcttcctcaagatcacacggta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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