Basic Information
VIS ID
TVIS30001745
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
17255993/17213994 (Hg38)
End
17255993/17213994 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/2777333; hsa-mir-107/Downstream/631113;
Nearest TSS
ENST00000439456/Upstream/11940; ENST00000497849/Downstream/12904;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/12206, chr10-CpG: 195/Downstream/14437
Nearby gene
VIM-AS1(No orient, 245)
Upstream sequence
ttcatagagataggtttttgctatgttgcccaggctggtcttgaattcctgagctcaggtgatcctcccacttcagcatcttgaagtgctaaaattatag
Downstream sequence
gcatgagccaccAGACTTGCTTTCTTTAATAAAACAGAGCTCTCAAAAAAATGGATCTCCCCCATCTCATGAGAAAATTGAAACATTCCACTGAAGGAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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