Basic Information
VIS ID
TVIS30001751
Fusion event
HIV-DNAJC1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.31
Reference genome
GRCh37/hg19
Start
22207229/21918300 (Hg38)
End
22207229/21918300 (Hg38)
Orient
-
Location type
Intronic
Target gene
DNAJC1
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-16-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-1265/Upstream/421659; hsa-mir-107/Downstream/2357385;
Nearest TSS
ENST00000439456/Upstream/57394; ENST00000564681/Downstream/85099;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/382819, chr10-CpG: 77/Downstream/84745
Upstream sequence
AAGAAACTGACATCTAAATATGATACATATCCACATTTTATTATTTAATCAAGACTAAATAGAAACAGAAACTCATTACCTGTATAAGACAAAATGTCCT
Downstream sequence
CACTCCTCTTAAATTTGCAAATAAAATGGAAAGCAATATATATTTTGGTACAATTATACAGATGTTCATGTAAAGTTTTTTTTTTTTTTTTTTAACACTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate