Basic Information
VIS ID
TVIS30001755
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
31456504/31167575 (Hg38)
End
31456504/31167575 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/798910; hsa-mir-107/Downstream/3912023;
Nearest TSS
ENST00000439456/Upstream/135638; ENST00000605929/Downstream/20308;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/33188, chr10-CpG: 243/Downstream/150723
Nearby gene
ZNF438(No orient, 135638)
Upstream sequence
gcaataatactatgtacatttttaggataggtgtcaaatttgacaaaaatcctctttcaagtctctttcatatatggactatTAAAACTGTATTTTCTCC
Downstream sequence
CTACTTACAGCACCATGATACTAAAACTAAAACTAgccctgaaactacaggaattttgatcacttctattttgtgcaattctcattaaaaaagaacaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate