Basic Information
VIS ID
TVIS30001763
Fusion event
HIV-RSU1P2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
45647765/45152317 (Hg38)
End
45647765/45152317 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA10G
Target gene
RSU1P2
Nearest miRNA
hsa-mir-1265/Upstream/2154636; hsa-mir-107/Downstream/11697;
Nearest TSS
ENST00000439456/Upstream/151429; ENST00000483623/Downstream/29110;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/150979, chr10-CpG: 64/Downstream/46226
Upstream sequence
ctcttttgcccaggctggagtgtagtggcgctacctctgctctctgcaccctctgcctcctgtgctcaagccatcccccggcctcagtctcccaagtagc
Downstream sequence
tgagactacaggttcactccatcaggcctggcaaatttttgtatttttggtagagatgggggtttcactttgttgccctgagctcaaagcgatccgcccg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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