VISDB Viral Integration Site DataBase

VIS ID

TVIS30001764

Fusion event

HIV-ZFAND4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q11.22

Reference genome

Start

End

46127933/45632485 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-182-5p ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-340-5p ; hsa-mir-5585-5p ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-4635 ; hsa-mir-4538 ; hsa-mir-3163 ; hsa-mir-4453 ; hsa-mir-562 ; hsa-mir-548n ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-4257 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-34b-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-6721-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-1537-5p ; hsa-mir-4738-5p ; hsa-mir-4761-5p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-4329 ; hsa-mir-4324 ; hsa-mir-383-3p ; hsa-mir-4293 ; hsa-mir-483-5p ; hsa-mir-6807-5p ; hsa-mir-4451 ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-6831-5p ; hsa-mir-3927-3p ; hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-4717-3p

Nearest miRNA

hsa-mir-1265/Upstream/468397; hsa-mir-107/Downstream/3353027;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/37471, chr10-CpG: 78/Downstream/39744

Nearest cancer related gene

ZFAND4(OG, No orient, 0)

Upstream sequence

atggaataaaattaaaactaaaataagagtgagtagaaagaaaaatgatttgtaaaggctatgttttctttaaaaaagtagaaaaaaatttttaatgaga

Downstream sequence

ggatgaagagagaagagaaaaaaataagttcactgattttcacttagtaattaggagtcaaaggatatttaaagctggcaaataaaagaggagaaggtta