Basic Information
VIS ID
TVIS30001769
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
64926265/63166505 (Hg38)
End
64926265/63166505 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10C
Nearest miRNA
hsa-mir-1265/Upstream/5861946; hsa-mir-107/Downstream/206452;
Nearest TSS
ENST00000439456/Upstream/33215; ENST00000609436/Downstream/10050;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/32929, chr10-CpG: 122/Downstream/298605
Nearby gene
JMJD1C(No orient, 716)
Upstream sequence
TGGCTCATGCAAGAGCAAGAGAAGCAAAAGGTTTTGAGGAAAAACAATCACCACAGACTTTGGGATCCTGGCAGGCTTTAGGGGACCAGCAGGTGGTACT
Downstream sequence
CTACTCCAGAATTAACACCTTGGCTTTCACTTAATTTTACATCAAAATTAAATCAGATGGAACATATGAAAGCATTAGACAAAAGCCACTTTATCAGCTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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