VISDB Viral Integration Site DataBase

VIS ID

TVIS30001771

Fusion event

HIV-RUFY2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q21.3

Reference genome

Start

End

70138208/68378451 (Hg38)

Orient

+

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-425-5p ; hsa-mir-196a-5p ; hsa-mir-20a-5p ; hsa-mir-1205 ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-127-5p ; hsa-mir-593-5p ; hsa-mir-767-5p ; hsa-mir-7153-5p ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-6715b-5p ; hsa-mir-3925-5p ; hsa-mir-4269 ; hsa-mir-509-5p ; hsa-mir-4418 ; hsa-mir-509-3-5p ; hsa-mir-4796-3p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-3149 ; hsa-mir-4477b ; hsa-mir-1231 ; hsa-mir-568 ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-mir-4724-3p ; hsa-let-7a-3p ; hsa-mir-409-5p ; hsa-mir-4720-3p ; hsa-mir-6876-3p ; hsa-mir-626 ; hsa-mir-3120-5p ; hsa-mir-29b-1-5p ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-6782-3p ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4428

Nearest miRNA

hsa-mir-1265/Upstream/975041; hsa-mir-107/Downstream/3412296;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/45635, chr10-CpG: 116/Downstream/27998

Upstream sequence

GTGCACAAGGTTTGAGGAACGTATGTCTGGAAATCCAAGTGCACCCACTCTGCTTGATGGCAGTGTATTACCACAGCAGCTGACCAAGAAATGTACAGGG

Downstream sequence

TTCCTAACATCCTTTTAGAATATTTAATAGCATTTAGATTCCTTTCtatttaatatattataaaattGTTGATTCTCTTTTCATTTAGTCTGTTTAAATA