VISDB Viral Integration Site DataBase

VIS ID

TVIS30001775

Fusion event

HIV-ANAPC16 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q22.1

Reference genome

Start

End

73989318/72229560 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-125b-5p ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-155-5p ; hsa-mir-6514-3p ; hsa-mir-6811-3p ; hsa-mir-125a-5p ; hsa-mir-488-3p ; hsa-mir-605-5p ; hsa-mir-670-5p ; hsa-mir-4319 ; hsa-mir-4324 ; hsa-mir-5186 ; hsa-mir-510-3p ; hsa-mir-4715-3p ; hsa-mir-6730-5p ; hsa-mir-5681a ; hsa-mir-4732-3p ; hsa-mir-345-3p ; hsa-mir-186-3p ; hsa-mir-4733-5p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-606 ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-4443 ; hsa-mir-6515-5p ; hsa-mir-7977 ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6847-3p ; hsa-mir-214-5p ; hsa-mir-383-3p ; hsa-mir-4284 ; hsa-mir-24-3p ; hsa-mir-4684-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-6771-3p

Nearest miRNA

hsa-mir-1265/Upstream/438760; hsa-mir-107/Downstream/491469;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/13203, chr10-CpG: 20/Downstream/31455

Upstream sequence

GAATGCTTGAGGCCTAGTAGTGCTAACGTGAAGTACTGCCTGAAAAAGGACAGCTGTGTCCTCTCTCCCCGTTTGTTTTAGGATTTTCGCAATAAGGTAC

Downstream sequence

ATCCCCCAAATGGTTTCTGCTACCTTTTTAAAAATCAAATGTTTCTACGTGAGCTGTAAATTTTTGAGAATATGTTTTGCTGTATCAGCCCTTGCCTGAC