Basic Information
VIS ID
TVIS30001783
Fusion event
HIV-LOC105378414 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q23.31
Reference genome
GRCh37/hg19
Start
89806638/88046881 (Hg38)
End
89806638/88046881 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D
Target gene
LOC105378414
Nearest miRNA
hsa-mir-1265/Upstream/542927; hsa-mir-107/Downstream/1016454;
Nearest TSS
ENST00000439456/Upstream/94682; ENST00000526923/Downstream/536309;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/182553, chr10-CpG: 61/Downstream/535890
Nearby gene
PTEN(No orient, 74951)
Upstream sequence
CTTCTCCACAATTTACACAGTAGTATATTGCATCGTCTACCTTCATATGCAAAAATAGACTAAAAACATAAAAGTGGTTTGTAATaataccacatgttct
Downstream sequence
cacttatacataggaactgaacagtggatactcatgaacataaagatggcagcaataggcactggggactgctagaggaaggagggcagggattgaaacc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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