VISDB Viral Integration Site DataBase

VIS ID

TVIS30001790

Fusion event

HIV-BTRC integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q24.32

Reference genome

Start

End

103309139/101549382 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-183-5p ; hsa-mir-10a-5p ; hsa-mir-193b-3p ; hsa-mir-320a ; hsa-mir-92a-3p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-let-7e-5p ; hsa-mir-195-5p ; hsa-mir-497-5p ; hsa-mir-4271 ; hsa-mir-548au-3p ; hsa-mir-765 ; hsa-mir-766-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-3974 ; hsa-mir-3714 ; hsa-mir-548an ; hsa-mir-7155-3p ; hsa-mir-3136-3p ; hsa-mir-4722-5p ; hsa-mir-5008-5p ; hsa-mir-605-3p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-4762-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4695-5p ; hsa-mir-554 ; hsa-mir-4709-5p ; hsa-mir-624-5p ; hsa-mir-101-3p ; hsa-mir-6884-5p ; hsa-mir-421 ; hsa-mir-3115 ; hsa-mir-505-3p ; hsa-mir-493-3p ; hsa-mir-6871-5p ; hsa-mir-15b-5p ; hsa-mir-10a-3p

Nearest miRNA

hsa-mir-107/Upstream/574298; hsa-mir-1307/Downstream/52035;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/194725, chr10-CpG: 53/Downstream/17037

Upstream sequence

aagccaggtgtggtggcatgagtctatagtcctcactacttgggaggcttaagcaggaaaatcacttgagcccaggagtttgaggttacagtgagctatg

Downstream sequence

atcacactaccgcattctagcctaggtgacaaaacaagactctgtctctaaaaaaaatgatgatgatgacacctgtaatcccagcactttgggaggccga