VISDB Viral Integration Site DataBase

VIS ID

TVIS30001794

Fusion event

HIV-NT5C2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q24.33

Reference genome

Start

End

104872603/103112846 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-34a-5p ; hsa-mir-21-5p ; hsa-mir-193b-3p ; hsa-mir-5089-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-4537 ; hsa-mir-1254 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-6504-3p ; hsa-mir-6746-3p ; hsa-mir-4438 ; hsa-mir-6869-5p ; hsa-mir-4279 ; hsa-mir-1200 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-5571-5p ; hsa-mir-498 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-550b-2-5p ; hsa-mir-6514-3p ; hsa-mir-6894-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6889-3p ; hsa-mir-1914-5p ; hsa-mir-6752-3p ; hsa-mir-6729-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-6131 ; hsa-mir-4454 ; hsa-mir-3663-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-4485-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-3148 ; hsa-mir-4477b ; hsa-mir-651-3p ; hsa-mir-7856-5p

Nearest miRNA

hsa-mir-107/Upstream/676262; hsa-mir-1307/Downstream/281407;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/193291, chr10-CpG: 117/Downstream/79639

Upstream sequence

AACCCAACCACCCAAGAATAGTCATTTGCTTTTATGTTATAAGAATGATCAACATCAACATGCTCATCTATTTAGCTGTAGGCTACATGATGTTGGTTCT

Downstream sequence

CTAAGCCTCTAACTAGAAAAGGTGATAACGCACATTTTTCTCTGAGAAAATTTTAAGTGAGATCTTTCCAATTATCATATAAACAAATGCCCAAGGACTT