Basic Information
VIS ID
TVIS30001801
Fusion event
HIV-SORCS3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
106557409/104797651 (Hg38)
End
106557409/104797651 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
SORCS3
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-26b-5p
Nearest miRNA
hsa-mir-107/Upstream/529246; hsa-mir-202/Downstream/6100439;
Nearest TSS
ENST00000439456/Upstream/131451; ENST00000393176/Downstream/361277;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/154597, chr10-CpG: 100/Downstream/2366371
Upstream sequence
ATATTGTTTGTAATTGTTTGACTACTATGTGCCTCACACATTTATTTCATCTAATCTTTAGAGCAATGTCTAAGGTagctttggagaagttaagtaaact
Downstream sequence
gcctaaagtcacacagtaggtaaggtgggaccaggctttgaatttcacatctcaagactgatctctatatatccaaagtccatgctTAGCTAACTTTTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate