VISDB Viral Integration Site DataBase

VIS ID

TVIS30001804

Fusion event

HIV-MXI1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q25.2

Reference genome

Start

End

112021284/110261526 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-106b-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-769-3p ; hsa-mir-615-3p ; hsa-mir-30c-5p ; hsa-mir-24-3p ; hsa-mir-27a-5p ; hsa-mir-155-5p ; hsa-mir-20a-5p ; hsa-mir-1273e ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-219b-3p ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-302f ; hsa-mir-6715b-3p ; hsa-mir-676-5p ; hsa-mir-342-3p ; hsa-mir-216b-3p ; hsa-mir-548g-3p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4775 ; hsa-mir-4735-5p ; hsa-mir-590-3p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-493-3p ; hsa-mir-4537

Nearest miRNA

hsa-mir-107/Upstream/5993121; hsa-mir-202/Downstream/636564;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/34070, chr10-CpG: 70/Downstream/42853

Nearest cancer related gene

MXI1(TSG, No orient, 0)

Upstream sequence

CCATTTTTTTTTTTTTTTTAACCCCTCCAAGAGAGTGTGAGGCAAAAGCCAAAGCTCTAGAGGTCATCAAATCATATTGTGGTTTACAGACAggacctta

Downstream sequence

gttcctctaaaattacgtgatagagatgaatgatctttaagatttcttctagACTAAAAATTTCTGCTATTTGAAGTACCCAATCCCACTTTTTACTCTT