Basic Information
VIS ID
TVIS30001805
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
113139365/111379607 (Hg38)
End
113139365/111379607 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/390594; hsa-mir-202/Downstream/920005;
Nearest TSS
ENST00000439456/Upstream/27504; ENST00000643850/Downstream/804103;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/300062, chr10-CpG: 35/Downstream/803918
Nearby gene
ADRA2A(No orient, 298703)
Upstream sequence
gttgaactcaaccagaaatcagaaggcagaggagcttgatgatgctgtccatagaggtcagcctcttgagactgagcagtggaaagtgatatggagggat
Downstream sequence
aaagaacagagaatatctagcacaGAACATGAGCAAGCTAGCTCTAtccaagcagggagaacaataagttcaattgttctgagatccgagtgtgcctgga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate