Basic Information
VIS ID
TVIS30001806
Fusion event
HIV-LOC105378486 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
113724134/111964376 (Hg38)
End
113724134/111964376 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
LOC105378486
Nearest miRNA
hsa-mir-107/Upstream/975363; hsa-mir-202/Downstream/335236;
Nearest TSS
ENST00000439456/Upstream/612273; ENST00000643850/Downstream/219334;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/884831, chr10-CpG: 35/Downstream/219149
Nearby gene
GPAM(No orient, 185488)
Upstream sequence
ctgactctaatacccttactttgtttattacattattttgcctttcAAGACACGAAATTTTTACTAACTGGCTTCTTCCTGTTTTGCTAACTTAAGTACC
Downstream sequence
CACACAGAAGCAGGGTTCTTCTCCCAGGAAATCAGCTCCCTTGGGTAGAGAATTATCCAACACAGTAATTGGTGCCTAAAATTGCAGGTGTATTCCCAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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