Basic Information
VIS ID
TVIS30001810
Fusion event
HIV-chr10 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.11
Reference genome
GRCh37/hg19
Start
121328662/119569150 (Hg38)
End
121328662/119569150 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10F ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/191107; hsa-mir-202/Downstream/389363;
Nearest TSS
ENST00000439456/Upstream/26442; ENST00000450186/Downstream/8064;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/25493, chr10-CpG: 92/Downstream/27151
Nearby gene
TIAL1(No orient, 4316)
Upstream sequence
CTGAAATTTATACAATAATTCTCAGAACATGCACAGTTGCATATGGCTACGTATTTCATGCTTTATTTTGTCTAGATGGTTTCAGACTTCTCTTTGCTGG
Downstream sequence
TATACCAAAACGTAAGGAAGAAAGATAAAGGACCAGGAAAAAAAATTACACTTGGGCAAGTTATGGTATCTGCTGATTTTATACAGCAAAATCTGGTTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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