VISDB Viral Integration Site DataBase

VIS ID

TVIS30001811

Fusion event

HIV-TIAL1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q26.11

Reference genome

Start

End

121341054/119581542 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10F ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-181a-5p ; hsa-mir-30a-5p ; hsa-mir-27a-3p ; hsa-mir-181c-5p ; hsa-mir-504-3p ; hsa-mir-1250-3p ; hsa-mir-1273e ; hsa-mir-25-5p ; hsa-mir-658 ; hsa-mir-4722-5p ; hsa-mir-6087 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-4695-5p ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-5698 ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-6722-5p ; hsa-mir-122-5p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-5693 ; hsa-mir-6736-3p ; hsa-mir-653-3p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6778-3p ; hsa-mir-150-5p ; hsa-mir-6814-5p ; hsa-mir-3691-3p ; hsa-mir-224-5p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-3620-5p ; hsa-mir-6842-3p ; hsa-mir-1587 ; hsa-mir-647 ; hsa-mir-197-3p ; hsa-mir-193b-5p ; hsa-mir-4741 ; hsa-mir-4675 ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-6829-5p ; hsa-mir-4656 ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-378g ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-6890-5p ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-3189-3p ; hsa-mir-3065-3p ; hsa-mir-6813-3p ; hsa-mir-4314 ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-4649-3p ; hsa-mir-3664-3p ; hsa-mir-4433a-3p ; hsa-mir-1298-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-6812-3p ; hsa-mir-6818-3p ; hsa-mir-4684-5p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-4305 ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-4699-3p ; hsa-mir-28-3p ; hsa-mir-4282 ; hsa-mir-548c-3p

Nearest miRNA

hsa-mir-107/Upstream/203499; hsa-mir-202/Downstream/376971;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/37885, chr10-CpG: 92/Downstream/14759

Upstream sequence

CATAATAAAACATGAACATTTCCAATTTAATCACAATATATCCAAGGATTTACCTACTCTCCCCCATTTATAAATTCCTCCTATAAAAGTTATTGAACTC

Downstream sequence

TTACACAGTATAGATCACATTTACTTTTGATTAACTCATTATCCTAAACCATCAAATTTTGAAAACATATGACAAAAAGCTAGACTTTATAAGTTTTACC