Basic Information
VIS ID
TVIS30001812
Fusion event
HIV-LOC105378515 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q26.12
Reference genome
GRCh37/hg19
Start
122013935/120254423 (Hg38)
End
122013935/120254423 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA10D ; FRA10F ; FRA10A ; FRA10B
Target gene
LOC105378515
Nearest miRNA
hsa-mir-107/Upstream/295831; hsa-mir-202/Downstream/2162542;
Nearest TSS
ENST00000439456/Upstream/313242; ENST00000496437/Downstream/202531;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/242512, chr10-CpG: 109/Downstream/202324
Nearby gene
PLPP4(No orient, 202531)
Upstream sequence
CAGAATATGATTGGCTTTAAATGCTGCTCAAAACATTATGTTGCATAATGTAATAACACTTTTCTTTCAAAATGAAATTGAACCATTAGGTTAGAAGTGC
Downstream sequence
TCATAGCATGAGAAAATGTATTTACTAGTTAGAAAAGGTTGTTTGGTTTGTCTTACTACACATCAAATAAATCTATTTTTTTAGTCTCAAATTTTATTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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