Basic Information
VIS ID
TVIS30001824
Fusion event
HIV-ANO9 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
GRCh37/hg19
Start
427127/427127 (Hg38)
End
427127/427127 (Hg38)
Orient
-
Location type
Intronic
Target gene
ANO9
Nearest miRNA
hsa-mir-6743/Upstream/217721; hsa-let-7a-2/Downstream/140962;
Nearest TSS
ENST00000527297/Upstream/5841; ENST00000526558/Downstream/2631;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1841, chr11-CpG: 97/Downstream/3687
Upstream sequence
CCCACCAGGAGAGACGTGGCCCACAGCAAGCCATGGTGCACGCCTTTCCCAAGACGGATGGGGGTCAAGAACCAGCATCTACAGGGCCAGACGTggtggc
Downstream sequence
tcacctgaggtcaggagctcgagaccagcctggccaacatggtgaaaccctttctctacaaaaaatacaaaaattagctgggtgtggtggtgcgcacctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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