Basic Information
VIS ID
TVIS30001826
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.5
Reference genome
GRCh37/hg19
Start
813246/813246 (Hg38)
End
813246/813246 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/245048; hsa-let-7a-2/Downstream/443359;
Nearest TSS
ENST00000527297/Upstream/1167; ENST00000534561/Downstream/5656;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/2737, chr11-CpG: 142/Downstream/5728
Nearby gene
RPLP2(No orient, 370)
Upstream sequence
cgaggagggaagatcacttgaggccagcagtttgagaccagcctgggcaaatagcaagaccccatctctaaaaaacaacctaacaaggcgtggtgtgcac
Downstream sequence
ctgtagtcccaactatgggaagttgagatggaaggatcacttgcccaggaggttgaagttaacagtgggccgtgatagtgccactgcactccatcctgag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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