VISDB Viral Integration Site DataBase

VIS ID

TVIS30001829

Fusion event

HIV-NUP98 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

p15.4

Reference genome

Start

End

3790542/3769312 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-34a-5p ; hsa-mir-98-5p ; hsa-mir-652-3p ; hsa-mir-18a-3p ; hsa-mir-149-5p ; hsa-mir-30a-3p ; hsa-mir-16-5p ; hsa-mir-4726-3p ; hsa-mir-6827-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-7108-5p ; hsa-mir-3187-3p ; hsa-mir-6514-3p ; hsa-mir-6894-3p ; hsa-mir-644a ; hsa-mir-663b ; hsa-mir-4529-5p ; hsa-mir-18b-3p ; hsa-mir-4324 ; hsa-mir-1279 ; hsa-mir-3934-5p ; hsa-mir-1226-3p ; hsa-mir-3651 ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-6779-3p ; hsa-mir-4687-5p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-4314 ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-3607-5p ; hsa-mir-4717-3p ; hsa-mir-514a-5p ; hsa-mir-93-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-1184 ; hsa-mir-1205 ; hsa-mir-153-5p ; hsa-mir-17-3p ; hsa-mir-216b-5p ; hsa-mir-3158-5p ; hsa-mir-4722-3p ; hsa-mir-4769-3p ; hsa-mir-5591-3p ; hsa-mir-6511b-5p ; hsa-mir-6727-3p ; hsa-mir-6811-5p ; hsa-mir-6817-5p

Nearest miRNA

hsa-mir-210/Upstream/1596174; hsa-let-7a-2/Downstream/86750;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/101535, chr11-CpG: 90/Downstream/27905

Nearest cancer related gene

NUP98(TSG, No orient, 0)

Upstream sequence

acaggagttcctgaacagcctaggcaacacaatgggaccccatctctacaaaaaaattttaaaaattagtcaggctaatggcacttgcctgtggtcttag

Downstream sequence

ctacttgggagaccgaggtgggtatatggcttgagcctgggagtttgaggcagcggggagctgtgatggagccactgcacgacagcctgggtgacagagc