Basic Information
VIS ID
TVIS30001833
Fusion event
HIV-STIM1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
4098643/4077413 (Hg38)
End
4098643/4077413 (Hg38)
Orient
-
Location type
Intronic
Target gene
STIM1
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-let-7b-5p ; hsa-mir-769-3p ; hsa-mir-17-3p ; hsa-mir-1231 ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-3650 ; hsa-mir-4711-3p ; hsa-mir-4683 ; hsa-mir-1273f ; hsa-mir-6776-5p ; hsa-mir-6861-5p ; hsa-mir-4638-5p ; hsa-mir-6793-3p ; hsa-mir-185-5p ; hsa-mir-185-3p ; hsa-mir-1180-3p ; hsa-mir-1226-5p ; hsa-mir-1304-5p ; hsa-mir-1914-3p ; hsa-mir-3184-5p ; hsa-mir-423-5p ; hsa-mir-4778-3p ; hsa-mir-5194 ; hsa-mir-6734-5p ; hsa-mir-6738-5p ; hsa-mir-6783-5p ; hsa-mir-6834-5p ; hsa-mir-6850-3p ; hsa-mir-6875-3p ; hsa-mir-8055
Nearest miRNA
hsa-mir-210/Upstream/221272; hsa-let-7a-2/Downstream/3157353;
Nearest TSS
ENST00000527297/Upstream/2894; ENST00000533343/Downstream/4792;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/221212, chr11-CpG: 68/Downstream/17046
Upstream sequence
ataattataagtggatgaattcaatttaatatataacagcccttaatttggatacatctaatgatgtagtctaaaatatgtaaagcaaatattgactgaa
Downstream sequence
ctaaaatgatactagacaaattttataatcaaagttagagattttaatatgcttctctcaataagccaccaacagcatccataaggatataaaaaattta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate