Basic Information
VIS ID
TVIS30001834
Fusion event
HIV-FAM160A2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
6235645/6214415 (Hg38)
End
6235645/6214415 (Hg38)
Orient
-
Location type
Exonic
Target gene
FAM160A2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-181a-5p ; hsa-mir-760 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p
Nearest miRNA
hsa-mir-210/Upstream/2358274; hsa-let-7a-2/Downstream/1020351;
Nearest TSS
ENST00000527297/Upstream/8849; ENST00000533426/Downstream/940;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1606115, chr11-CpG: 32/Downstream/20123
Upstream sequence
TGGCACAACATTTCACTCTTAATAAGAGCTCAATTAACCTGGGTTAATAGGCTATCTAGGGAGGGCAGGTACGGGTGTGGTGGGATAGGCCTCACCTAGG
Downstream sequence
GGATCAGAACGGCGTGGGGCAGGTCCTGCTGCAGGGCCCTCAGCCCAGTCCAACTTGCCACGGGCAATGAGGTACTTCTTGGCTTTGGACAGCAGTGCTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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