Basic Information
VIS ID
TVIS30001835
Fusion event
HIV-GVINP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
6738763/6717532 (Hg38)
End
6738763/6717532 (Hg38)
Orient
+
Location type
ncRNA_exonic
Target gene
GVINP1
Nearest miRNA
hsa-mir-210/Upstream/2861391; hsa-let-7a-2/Downstream/517234;
Nearest TSS
ENST00000527297/Upstream/34131; ENST00000307401/Downstream/51523;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/33820, chr11-CpG: 58/Downstream/208757
Upstream sequence
ATAGCCGTTTGTCTCCAAGTTTCTCAGAGACCTTGTCAAAAACAGCTGCCACCCATGTTAGAGGTACATATGCTGCATCCCCATCCATCAGCTCAATGGG
Downstream sequence
AACACCAGATATCATCAGGTCTGCGGCAATTTGGGGAAGCGAGAAAAAAATCTTTTTTATGGAGGAAGCTTCTTCCAGAGCTTCATAAATCTGACCAACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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