Basic Information
VIS ID
TVIS30001838
Fusion event
HIV-SBF2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
10282452/10260905 (Hg38)
End
10282452/10260905 (Hg38)
Orient
+
Location type
Intronic
Target gene
SBF2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p
Nearest miRNA
hsa-mir-210/Upstream/1170526; hsa-let-7a-2/Downstream/247365;
Nearest TSS
ENST00000527297/Upstream/66948; ENST00000528544/Downstream/33302;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/501982, chr11-CpG: 76/Downstream/32827
Upstream sequence
aggagtctgacattgcagtagctgtgattgtgccactgcactccagcttaggcaacagagagaccctgcctcaaaaaagaaaagaaagaaggggagggag
Downstream sequence
ggagggagagagggagaaaagaaaaaaaAATAGCCAATATTTAAGCACCACTACGTAAGTAGTAacaactctgtaataaaatggcaatccaattataaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate