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TVIS30001841
Basic Information
VIS ID
TVIS30001841
Fusion event
HIV-MICAL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
12158055/12136508 (Hg38)
End
12158055/12136508 (Hg38)
Orient
+
Location type
Intronic
Target gene
MICAL2
miRNAs that regulate target gene
hsa-mir-124-3p
;
hsa-mir-6786-3p
;
hsa-mir-4324
;
hsa-mir-4329
;
hsa-mir-5000-3p
;
hsa-mir-4436a
;
hsa-mir-4293
;
hsa-mir-4740-5p
;
hsa-mir-7153-5p
;
hsa-mir-146b-5p
;
hsa-mir-146a-5p
;
hsa-mir-589-5p
;
hsa-mir-6857-3p
;
hsa-mir-4251
;
hsa-mir-5188
;
hsa-mir-4773
;
hsa-mir-4730
;
hsa-mir-6850-5p
;
hsa-mir-675-5p
;
hsa-mir-4466
;
hsa-mir-4664-5p
;
hsa-mir-342-5p
;
hsa-mir-25-5p
;
hsa-mir-5580-5p
;
hsa-mir-3692-5p
;
hsa-mir-5739
;
hsa-mir-185-5p
;
hsa-mir-1908-5p
;
hsa-mir-1911-3p
;
hsa-mir-197-5p
;
hsa-mir-3132
;
hsa-mir-3150b-3p
;
hsa-mir-3170
;
hsa-mir-3529-5p
;
hsa-mir-3614-5p
;
hsa-mir-379-5p
;
hsa-mir-4253
;
hsa-mir-4306
;
hsa-mir-4325
;
hsa-mir-4644
;
hsa-mir-4784
;
hsa-mir-5090
;
hsa-mir-5572
;
hsa-mir-6087
;
hsa-mir-6502-3p
;
hsa-mir-663a
;
hsa-mir-6731-5p
;
hsa-mir-6737-5p
;
hsa-mir-6758-5p
;
hsa-mir-6760-5p
;
hsa-mir-6775-5p
;
hsa-mir-6787-5p
;
hsa-mir-6812-5p
;
hsa-mir-6819-5p
;
hsa-mir-6855-5p
;
hsa-mir-6856-5p
;
hsa-mir-6862-5p
;
hsa-mir-6881-5p
;
hsa-mir-744-5p
;
hsa-mir-8085
Nearest miRNA
hsa-mir-210/Upstream/353286; hsa-let-7a-2/Downstream/27175;
Nearest TSS
ENST00000527297/Upstream/15033;
ENST00000532166/Downstream/1880;
Nearest CpG islands
None/Target,
chr11-CpG: 30/Upstream/25039
,
chr11-CpG: 72/Downstream/241102
Upstream sequence
tacagggttgctgggaggattagctgaggtagcagtgttaactacccaaggcaatacctgtacacaggttaatccctcCCTCTTATAACAACTAAGTAGT
Downstream sequence
TTTGTCGGTGTCTCTAAAAGTCAGGGTACCTGGAGGGGGGCagctgaatggggtcctaggtgaggaaatcaccaattgtatcaagctcctcattttatgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Active CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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