Basic Information
VIS ID
TVIS30001843
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
13219815/13198268 (Hg38)
End
13219815/13198268 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/1034501; hsa-let-7a-2/Downstream/2771265;
Nearest TSS
ENST00000527297/Upstream/63429; ENST00000529050/Downstream/78384;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/187231, chr11-CpG: 168/Downstream/78981
Nearby gene
ARNTL(No orient, 79459)
Nearest cancer related gene
ARNTL(TSG, No orient, 79459)
Upstream sequence
agaagggcattacatcatgataaagggtttaattcgacaagactttactaaatatatatgcacccaacattggagcacccagattcataaaacaagtact
Downstream sequence
tgtgggcctatgaaaagacttagttgcataataatagtggtagacatcaacaccccactgacagtgttagatcatcgaggcagaaaactaacaaataaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate