Basic Information
VIS ID
TVIS30001844
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
15917569/15896023 (Hg38)
End
15917569/15896023 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/3732256; hsa-let-7a-2/Downstream/73510;
Nearest TSS
ENST00000527297/Upstream/137125; ENST00000530418/Downstream/14934;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/245655, chr11-CpG: 20/Downstream/42286
Nearby gene
SOX6(No orient, 70426)
Upstream sequence
cctgtgttcagggagggagtgaggaGTGGGGAGGTTTCCTTACTTATAGATGGGGTCACAGGCCCATAAGGACTGGGCTCTTTCTGCCTCAGAAAAGTGA
Downstream sequence
GTACATACTAGGTGCCCACCCAAGTTCATATGTGCCATTCTGTTTCCCTTCTGTCCACAGCACTCCCTCCAAAACCCCCATACTGGGGAAGCACCAAGGC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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