Basic Information
VIS ID
TVIS30001845
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p14.2
Reference genome
GRCh37/hg19
Start
26946011/26924464 (Hg38)
End
26946011/26924464 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA11D
Nearest miRNA
hsa-mir-210/Upstream/3505274; hsa-let-7a-2/Downstream/590506;
Nearest TSS
ENST00000527297/Upstream/201037; ENST00000318627/Downstream/69720;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/592199, chr11-CpG: 29/Downstream/438608
Nearby gene
FIBIN(No orient, 69617)
Upstream sequence
gctcttcctattcctgtgaagaatgtcattggcattttaatagggattgcacaccatcatgtccagctaattctttgtactttagtagagatggagtttc
Downstream sequence
accatgttgtccaggctggtctcaaactcctgagctcaggcaatctgcccaccttggcctcccaaagtgctaggattacagatgtgagccactgtgcctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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