Basic Information
VIS ID
TVIS30001848
Fusion event
HIV-LOC101928316 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
30717632/30696085 (Hg38)
End
30717632/30696085 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101928316
Nearest miRNA
hsa-mir-210/Upstream/2218537; hsa-let-7a-2/Downstream/4245752;
Nearest TSS
ENST00000527297/Upstream/109213; ENST00000528872/Downstream/210620;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/109504, chr11-CpG: 37/Downstream/673455
Nearby gene
MPPED2(No orient, 109702)
Upstream sequence
aaaggcaaggctcactctgtcatatttgccacagtattctcagtgcctcatgcatcgagtatgggtgccccttaaatattttttgaatgaataagtAACA
Downstream sequence
ATATTTTGGCTTTGACTTctgtcttgatctcaaccatttcatttgtaaaataagtgggttaggctagatgatcttcatgtccccttccagtctaggacac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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