Basic Information
VIS ID
TVIS30001850
Fusion event
HIV-ELP4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p13
Reference genome
GRCh37/hg19
Start
31777588/31756040 (Hg38)
End
31777588/31756040 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11E
Target gene
ELP4
Nearest miRNA
hsa-mir-210/Upstream/3278492; hsa-let-7a-2/Downstream/3185797;
Nearest TSS
ENST00000527297/Upstream/105859; ENST00000638384/Downstream/5872;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/246086, chr11-CpG: 98/Downstream/42472
Upstream sequence
AATGATATCAGCAACACCACAACAACTTTTTGGTAGATCCTCTGAATTTTCCTACATATCCGGGATAAGATTTTATTTTGAAGGAGTAAATATTGAAAGG
Downstream sequence
TTTGGGAAATTTATTTAAAAGAATCACAGAAGTGATCACAAATAGAAGTAACAAAGCCTCTGGCTTTGCCTGTTTTGGGGGATGGGAGCTcatcttcact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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