Basic Information
VIS ID
TVIS30001851
Fusion event
HIV-LOC105376626 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p13
Reference genome
GRCh37/hg19
Start
35064788/35043241 (Hg38)
End
35064788/35043241 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11E
Target gene
LOC105376626
Nearest miRNA
hsa-mir-1343/Upstream/101321; hsa-let-7a-2/Downstream/966857;
Nearest TSS
ENST00000527297/Upstream/58608; ENST00000526025/Downstream/94485;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/126408, chr11-CpG: 53/Downstream/95587
Nearby gene
PDHX(No orient, 47113)
Upstream sequence
tctcagagttactgcaagagatctgcaaatatacacacatgcccaacattgcctgtagcctgaatacataatatgtctaaatatattgaataatatgtgt
Downstream sequence
gctatttttcaaatatatAAATAACAATTCACTAAAATAGTTTTTCTAATACTGCATTTTTAGATCAGTGGGTGCTAATAGTACCAGACACACGTGTGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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