VISDB Viral Integration Site DataBase

VIS ID

TVIS30001855

Fusion event

HIV-CELF1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

p11.2

Reference genome

Start

End

47537411/47515859 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1301-3p ; hsa-mir-18a-3p ; hsa-mir-1229-3p ; hsa-mir-6511a-3p ; hsa-mir-6515-3p ; hsa-mir-6511b-3p ; hsa-mir-6784-3p ; hsa-mir-6862-3p ; hsa-mir-4715-3p ; hsa-mir-3064-3p ; hsa-mir-875-3p ; hsa-mir-6124 ; hsa-mir-2355-3p ; hsa-mir-4521 ; hsa-mir-4646-3p ; hsa-mir-4279 ; hsa-mir-7162-3p ; hsa-mir-3180-5p ; hsa-mir-3613-3p ; hsa-mir-412-3p ; hsa-mir-6754-3p ; hsa-mir-208b-3p ; hsa-mir-208a-3p ; hsa-mir-4804-3p ; hsa-mir-4720-3p ; hsa-mir-2277-3p ; hsa-mir-541-5p ; hsa-mir-8087 ; hsa-mir-4432 ; hsa-mir-499a-5p ; hsa-mir-4644 ; hsa-mir-4261 ; hsa-mir-4496 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-5011-3p ; hsa-mir-3925-5p ; hsa-mir-4773 ; hsa-mir-4727-5p ; hsa-mir-192-3p ; hsa-mir-6826-3p ; hsa-mir-513a-5p ; hsa-mir-6721-5p ; hsa-mir-4736 ; hsa-mir-657 ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-6817-5p ; hsa-mir-4769-3p ; hsa-mir-3189-3p ; hsa-mir-6734-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-4310 ; hsa-mir-7157-5p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-202-3p ; hsa-mir-8084 ; hsa-mir-3646 ; hsa-mir-1252-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-let-7d-5p ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7a-5p ; hsa-mir-6780a-3p ; hsa-mir-6501-5p ; hsa-mir-877-5p ; hsa-mir-4252 ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-495-5p ; hsa-mir-6509-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-331-5p ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-32-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-593-5p ; hsa-mir-4791 ; hsa-mir-3201 ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-183-5p ; hsa-mir-6847-3p ; hsa-mir-3912-5p ; hsa-mir-4711-3p ; hsa-mir-6737-3p ; hsa-mir-7157-3p ; hsa-mir-5008-3p ; hsa-mir-6889-3p ; hsa-mir-4716-5p ; hsa-mir-4698 ; hsa-mir-3662 ; hsa-mir-5587-5p ; hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-7113-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4753-3p ; hsa-mir-3688-5p ; hsa-mir-6837-3p ; hsa-mir-1236-3p ; hsa-mir-3677-5p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-23c ; hsa-mir-130a-5p ; hsa-mir-6757-3p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-330-3p ; hsa-mir-6835-3p ; hsa-let-7d-3p ; hsa-mir-1183 ; hsa-mir-1207-5p ; hsa-mir-1285-3p ; hsa-mir-138-5p ; hsa-mir-1537-5p ; hsa-mir-185-5p ; hsa-mir-1909-3p ; hsa-mir-1915-3p ; hsa-mir-30a-5p ; hsa-mir-30b-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30e-5p ; hsa-mir-3187-5p ; hsa-mir-3607-3p ; hsa-mir-3611 ; hsa-mir-3652 ; hsa-mir-3689a-5p ; hsa-mir-3689b-5p ; hsa-mir-3689e ; hsa-mir-3689f ; hsa-mir-3919 ; hsa-mir-4302 ; hsa-mir-4306 ; hsa-mir-4430 ; hsa-mir-4446-3p ; hsa-mir-4505 ; hsa-mir-4675 ; hsa-mir-4685-5p ; hsa-mir-4716-3p ; hsa-mir-4723-5p ; hsa-mir-4741 ; hsa-mir-4763-3p ; hsa-mir-493-3p ; hsa-mir-5011-5p ; hsa-mir-5189-5p ; hsa-mir-519a-3p ; hsa-mir-519b-3p ; hsa-mir-519c-3p ; hsa-mir-548q ; hsa-mir-5698 ; hsa-mir-570-3p ; hsa-mir-5787 ; hsa-mir-612 ; hsa-mir-6722-3p ; hsa-mir-6764-5p ; hsa-mir-6794-5p ; hsa-mir-6798-5p ; hsa-mir-6825-5p ; hsa-mir-6837-5p ; hsa-mir-6842-3p ; hsa-mir-6860 ; hsa-mir-6870-5p ; hsa-mir-7106-5p ; hsa-mir-7109-5p ; hsa-mir-7111-5p ; hsa-mir-765 ; hsa-mir-7854-3p ; hsa-mir-1199-5p ; hsa-mir-3194-5p ; hsa-mir-4303 ; hsa-mir-4319 ; hsa-mir-6751-3p ; hsa-mir-6778-3p ; hsa-mir-6849-3p ; hsa-mir-6858-3p

Nearest miRNA

hsa-mir-129-2/Upstream/114817; hsa-let-7a-2/Downstream/580923;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/89153, chr11-CpG: 55/Downstream/36500

Upstream sequence

aaagggaagataagggattaagagacctgggttccacaaccaACCACTGGGACTTGGACTTTCTTGAGTCACAGTGCTGTATTTGGTAAAATAAGGCAGC

Downstream sequence

TTGTAAAATGCCTTTTATTGGGAAACTCAAAATATTACTTTGCCTCtctttattatttacttatttatttttttttagatagagtcttgctctgtcaccc