VISDB Viral Integration Site DataBase

VIS ID

TVIS30001857

Fusion event

HIV-ZDHHC5 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q12.1

Reference genome

Start

End

57455073/57687601 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-32-5p ; hsa-mir-331-3p ; hsa-mir-125b-5p ; hsa-mir-25-3p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-4719 ; hsa-mir-7113-5p ; hsa-mir-218-1-3p ; hsa-mir-642b-5p ; hsa-mir-4649-5p ; hsa-mir-4685-5p ; hsa-mir-6729-5p ; hsa-mir-6837-5p ; hsa-mir-190a-3p ; hsa-mir-369-3p ; hsa-mir-374a-5p ; hsa-mir-656-3p ; hsa-mir-374b-5p ; hsa-mir-1277-5p ; hsa-mir-3145-3p ; hsa-mir-5011-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-6840-3p ; hsa-mir-3941 ; hsa-mir-8485 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-599 ; hsa-mir-6844 ; hsa-mir-758-3p ; hsa-mir-6808-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-642a-5p ; hsa-mir-7973 ; hsa-mir-581 ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-3691-3p ; hsa-mir-29b-1-5p ; hsa-mir-4446-5p ; hsa-mir-3924 ; hsa-mir-3713 ; hsa-mir-4469 ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-6866-3p ; hsa-mir-188-5p

Nearest miRNA

hsa-mir-129-2/Upstream/46315; hsa-let-7a-2/Downstream/1907476;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/18927, chr11-CpG: 66/Downstream/24413

Upstream sequence

tggaggttgcagtgagccaagatcacgcccttgcactccagcttgggtaacagagcaagactccgtctcaagaaaaaaaaaaTTGCTAACTGTATATGAG

Downstream sequence

AAGGCAAATAATGTCTTTTAAGTTTTGAAATGGGATGGTGGGTTTCTGATAGCTGAAAATTGAGAGAAAGGGCATTTATGCTTGTGCAACAAATAATACT