Basic Information
VIS ID
TVIS30001861
Fusion event
HIV-HNRNPUL2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
62489588/62722116 (Hg38)
End
62489588/62722116 (Hg38)
Orient
-
Location type
splicing
Target gene
HNRNPUL2
miRNAs that regulate target gene
hsa-mir-331-3p ; hsa-mir-326
Nearest miRNA
hsa-mir-129-2/Upstream/155045; hsa-let-7a-2/Downstream/67699;
Nearest TSS
ENST00000527297/Upstream/12271; ENST00000530625/Downstream/1869;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/12107, chr11-CpG: 142/Downstream/4406
Upstream sequence
CCTCCCATTCCTGTTTGGTAACGCTCTGAGACCCTGGAGAGCATACGCACCCACCTCTGCAAAGCATACAACCTCAGTGTTCGTATACTGTTTGGCATAC
Downstream sequence
CTCACATTCCTCTATGGTCTTGGGAGGGACTGCAGTGCGTACACGCTCCTCAACAGGCACAGCATGAATGAACACAAACTCTTCTGGTGGTGGGAAGAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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