VISDB Viral Integration Site DataBase

VIS ID

TVIS30001865

Fusion event

HIV-ATL3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.1

Reference genome

Start

End

63418249/63650777 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-186-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-6844 ; hsa-mir-4276 ; hsa-mir-194-3p ; hsa-mir-5693 ; hsa-mir-6792-3p ; hsa-mir-6768-5p ; hsa-mir-4691-5p ; hsa-mir-5583-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-3121-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-142-5p ; hsa-mir-5590-3p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-526b-3p ; hsa-mir-17-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-330-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-7109-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6885-5p ; hsa-mir-328-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-6884-5p ; hsa-mir-4731-5p ; hsa-mir-485-5p ; hsa-mir-637 ; hsa-mir-383-3p ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4743-5p ; hsa-mir-564 ; hsa-mir-1248 ; hsa-mir-1237-3p

Nearest miRNA

hsa-mir-129-2/Upstream/858006; hsa-let-7a-2/Downstream/691072;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/36265, chr11-CpG: 104/Downstream/20052

Upstream sequence

cctcgcacctggtacctgtgaatgtgaccttaCatatatctatagcacttggccctctacctcacacaaggtaagcattcgaaaaatggtTGAAAGGAAG

Downstream sequence

GAGCTTAGAAAGGAATAAATTTCAGGTGAAATGGTGACCAACTCAAGTTGTGATCGAAGTTTTACAGAGCAACAGCTCTCAACCACTAAGCCATGGCACT