Basic Information
VIS ID
TVIS30001871
Fusion event
HIV-FERMT3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
63983156/64215684 (Hg38)
End
63983156/64215684 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA11H
Target gene
FERMT3
Nearest miRNA
hsa-mir-129-2/Upstream/1422913; hsa-let-7a-2/Downstream/126165;
Nearest TSS
ENST00000527297/Upstream/3980; ENST00000540957/Downstream/3793;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/8108, chr11-CpG: 33/Downstream/10433
Upstream sequence
atttttagagatggggtctcgctctgtcacccagactagagtgcagtggtgcgatcatagctcactgcaaccttgaactcctgggctcaagcaatcttcc
Downstream sequence
tgccttagcttcctgagtggctggggctacaggcatgtgccacaagcctggctaattctttaaaaattgtttagagatggagttttgctacgttgcccag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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