VISDB Viral Integration Site DataBase

VIS ID

TVIS30001872

Fusion event

HIV-SF1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.1

Reference genome

Start

End

64541240/64773768 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-935 ; hsa-mir-320a ; hsa-mir-221-3p ; hsa-mir-544a ; hsa-mir-6738-3p ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-3606-3p ; hsa-mir-3158-5p ; hsa-mir-6859-3p ; hsa-mir-4258 ; hsa-mir-489-3p ; hsa-mir-548as-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-4294 ; hsa-mir-6124 ; hsa-mir-548ax ; hsa-mir-548ao-5p ; hsa-mir-3185 ; hsa-mir-802 ; hsa-mir-577 ; hsa-mir-651-3p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-3133 ; hsa-mir-539-5p ; hsa-mir-17-3p ; hsa-mir-1205 ; hsa-mir-1184 ; hsa-mir-3919 ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-1262 ; hsa-mir-185-5p ; hsa-mir-3150b-3p ; hsa-mir-329-3p ; hsa-mir-362-3p ; hsa-mir-371a-5p ; hsa-mir-3941 ; hsa-mir-4259 ; hsa-mir-4283 ; hsa-mir-4306 ; hsa-mir-4428 ; hsa-mir-4437 ; hsa-mir-4644 ; hsa-mir-4689 ; hsa-mir-4701-3p ; hsa-mir-4710 ; hsa-mir-4784 ; hsa-mir-5195-5p ; hsa-mir-571 ; hsa-mir-603 ; hsa-mir-6085 ; hsa-mir-6129 ; hsa-mir-6715a-3p ; hsa-mir-6715b-3p ; hsa-mir-6736-5p ; hsa-mir-6741-5p ; hsa-mir-6771-3p ; hsa-mir-6813-5p ; hsa-mir-6858-5p ; hsa-mir-8485

Nearest miRNA

hsa-mir-1237/Upstream/405065; hsa-let-7a-2/Downstream/104755;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/7477, chr11-CpG: 138/Downstream/3879

Upstream sequence

AGGAGTCCTTTTACATCTATAGGTTTTTTTCACTTCAAAATGGTTATCACTTAAGGAAGCAAACAGTTTGTTGGAAGAGGGGTTAGCAATAAAGACTGTT

Downstream sequence

CACTAAGGCTAACATCCAAGCAATTATTAGGAGGTGTTTCACCTCTTCCTCCCCACCAAGGCTTGCTTACCATTGGTACCCAGAACCATAAACCATGTTA