VISDB Viral Integration Site DataBase

VIS ID

TVIS30001880

Fusion event

HIV-POLA2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.1

Reference genome

Start

End

65037620/65270149 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-383-3p ; hsa-mir-1265 ; hsa-mir-2392 ; hsa-mir-5684 ; hsa-mir-3149 ; hsa-mir-297 ; hsa-mir-675-3p ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-145-3p ; hsa-mir-3171 ; hsa-mir-3605-5p ; hsa-mir-4729 ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-6862-5p ; hsa-mir-4253 ; hsa-mir-3945 ; hsa-mir-3622b-5p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-1292-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-3940-3p ; hsa-mir-508-5p ; hsa-mir-4439 ; hsa-mir-3136-5p ; hsa-mir-5001-3p ; hsa-mir-6820-3p ; hsa-mir-3118 ; hsa-mir-134-5p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-6857-3p ; hsa-mir-4513 ; hsa-mir-6855-3p ; hsa-mir-3117-5p ; hsa-mir-6730-3p ; hsa-mir-942-5p ; hsa-mir-199b-5p ; hsa-mir-199a-5p ; hsa-mir-4302 ; hsa-mir-888-3p

Nearest miRNA

hsa-mir-10392/Upstream/140171; hsa-let-7a-2/Downstream/174309;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/7694, chr11-CpG: 114/Downstream/44317

Upstream sequence

tcgtactcctcacctgcggtgatccacctgcctcggcctccaaagtgctgggattacagatgtgagccaccgtgcccagccCAGTAATTATTCTTTATAC

Downstream sequence

TAACTAAATAAATTTGTAGAAATTCATAAACATGGAGGGAGCCTTAATTATTCAAAGTAAATTACATCATAAGAAAGAAGGTAAGGgctgggtgcagtgg