Basic Information
VIS ID
TVIS30001887
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
65260881/65493410 (Hg38)
End
65260881/65493410 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA11H
Nearest miRNA
hsa-mir-10392/Upstream/48853; hsa-let-7a-2/Downstream/142900;
Nearest TSS
ENST00000527297/Upstream/5274; ENST00000620902/Downstream/4278;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/14290, chr11-CpG: 50/Downstream/4076
Nearby gene
MALAT1(No orient, 4352)
Nearest cancer related gene
MALAT1(OG, No orient, 4352)
Upstream sequence
TTTCCTGCTGTGGGGGCGGTCACAGTAGGTGAGGGAGCCTAAGTTTGTGCAGCAGCTACGGAAGGTCACATTGTTCCAGAAATCGGCTCTGGGAAGGTGG
Downstream sequence
GCAGCCAGGGGATGGGATTGGGAACTGCAAATTCCTAAAATCTTTAGAAAACAAGAAAGTTTGggctgggtgtggtggttcatgcctgtaatcccagcac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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